Sequence Upload and Data Archiving System
Project description
SeqUDAS Quality Control Analysis Component
Setting up a Development Environment
A conda environment.yml
file is provided in this repository. It can be used to set up a conda environment as follows:
conda env create -f environment.yml
Once the environment has been create, activate it:
conda activate sequdas-qc
...then install the sequdas_qc
codebase into the environment in 'editable' mode
pip install --editable .
You can verify that sequdas-qc
is available on the $PATH
by invoking the help output as follows:
sequdas-qc -h
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