This is a pre-production deployment of Warehouse, however changes made here WILL affect the production instance of PyPI.
Latest Version Dependencies status unknown Test status unknown Test coverage unknown
Project Description

Installation

You can install shogen by running:

$ pip install --user shogen

On Linux the executable script can then be found in ~/.local/bin

and on MacOS the script is under /Users/YOURUSERNAME/Library/Python/2.7/bin.

Usage

Typical usage is:

$ shogen.py [options] genomefile metabolismfile catalysationfile queries

Options:
  -h, --help   show this help message and exit
  -k K, --k=K  Number of ranked  shortest genome segments (Default to 5)
  -l L, --l=L  maximum length of a genome segment (Default to 200)

Samples

Sample files for finding functional gene units in e. coli are available here:

genome.txt metabolism.txt catalyze.txt queries.txt

Release History

Release History

1.4.3

This version

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1.4.2

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1.4.1

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1.4

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1.3

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1.2

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Download Files

Download Files

TODO: Brief introduction on what you do with files - including link to relevant help section.

File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
shogen-1.4.3.tar.gz (8.4 kB) Copy SHA256 Checksum SHA256 Source Nov 10, 2014

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