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Finding shortest genome segments that regulate metabolic pathways

Project description


You can install shogen by running::

$ pip install shogen


Typical usage is::

$ [options] genomefile metabolismfile catalysationfile queries

-h, --help show this help message and exit
-k K, --k=K Number of ranked shortest genome segments (Default to 5)
-l L, --l=L maximum length of a genome segment (Default to 200)

Project details

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