Finding shortest genome segments that regulate metabolic pathways.
You can install shogen by running:
$ pip --user install shogen
Typical usage is:
$ shogen.py [options] genomefile metabolismfile catalysationfile queries Options: -h, --help show this help message and exit -k K, --k=K Number of ranked shortest genome segments (Default to 5) -l L, --l=L maximum length of a genome segment (Default to 200)
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.