Finding shortest genome segments that regulate metabolic pathways
Project description
Installation
You can install shogen2 by running:
$ pip install shogen2
Usage
Typical usage is:
$ shogen2.py [options] genomefile metabolismfile.sbml catalysationfile queries Options: -h, --help show this help message and exit -k K, --k=K Number of ranked shortest genome segments (Default to 5) -l L, --l=L maximum length of a genome segment (Default to 200)
Samples
- Sample files for finding functional gene units in e. coli are available here:
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