silvio is an environment for Simulation of Virtual Organisms. silvio contains several linked microbial models.
Project description
Silvio
silvio is an environment to combine microbiological models to simulate virtual cells.
Authors: Ulf Liebal, Rafael Schimassek, Lars Blank
Contact: ulf.liebal@rwth-aachen.de
Licence: MIT Licence
Free software: MIT license
Documentation: https://silvio.readthedocs.io
Features
Simulate different components of a biological host using event-driven messaging.
Produce data on procedures performed on the host at the given state.
Credits
Extensive credits can be found in the author notes.
History
0.1.0 (2021-10-17)
First release on PyPI.
0.1.4 (2022-04-07)
add catalog with RecExpSim functions in src
0.1.5 (2022-04-07)
add __init__.py to catalog folder
0.1.6 (2022-04-07)
in RecExperiment: round print failure rate to two decimals
in RecExperiment.simulate_growth: separate argument progress bar waiting
0.1.7 (2022-05-03)
remove requirement cobra
0.1.8 (2022-05-03)
remove cobra code dependencies
0.1.8 (2022-05-03)
add cobra code dependencies
remove undelete_gene
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