sima 0.1.1

Software for analysis of sequential imaging data

License

SIMA: Python package for sequential image analysis. Developed by Patrick Kaifosh, Jeffrey Zaremba, Nathan Danielson.

Unless otherwise specified in individual files, all code is

Copyright (C) 2014 The Trustees of Columbia University in the City of New York.

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.

Installation and Use

For complete documentation go to <http://www.losonczylab.org/sima>

Dependencies

numpy >= 1.6.2 scipy >= 0.13.0 matplotlib >= 1.2.1 cython mdp >= 3.3 opencv >= 2.4.8 <http://opencv.org/downloads.html> scikit-image >= 0.9.3 shapely >= 1.2.14