Skip to main content

Simula Cardiac electromechanics solver

Project description

CI PyPI version Coverage github pages pre-commit.ci status Code style: black License: LGPL v3 DOI status

Simula Cardiac Electro-Mechanics Solver

simcardems is a FEniCS-based cardiac electro-mechanics solver and is developed as a part of the SimCardio Test project. The solver depends on pulse and cbcbeat.

Installation

See Installation instructions

Getting started

See the demos

Documentation

Documentation is hosted at http://computationalphysiology.github.io/simcardems.

Automated test

Tests are provided in the folder tests. You can run the tests with pytest

python3 -m pytest tests -vv

Contributing

See the contributing section

Citing

If you use simcardems in your research, please cite it as follows

@article{Finsberg2023,
  doi = {10.21105/joss.04753},
  url = {https://doi.org/10.21105/joss.04753},
  year = {2023},
  publisher = {The Open Journal},
  volume = {8},
  number = {81},
  pages = {4753},
  author = {Henrik Nicolay Topnes Finsberg and Ilsbeth Gerarda Maria van Herck and Cécile Daversin-Catty and Hermenegild Arevalo and Samuel Wall},
  title = {simcardems: A FEniCS-based cardiac electro-mechanics solver},
  journal = {Journal of Open Source Software}
 }

Known issues

Authors

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

simcardems-2023.7.1.tar.gz (120.4 kB view hashes)

Uploaded Source

Built Distribution

simcardems-2023.7.1-py3-none-any.whl (126.8 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page