Simula Cardiac Electro-Mechanics Solver
simcardems is a FEniCS-based cardiac electro-mechanics solver and is developed as a part of the SimCardio Test project. The solver depends on pulse and cbcbeat.
Installation
Getting started
See the demos
Documentation
Documentation is hosted at http://computationalphysiology.github.io/simcardems.
Automated test
Tests are provided in the folder tests. You can run the tests with pytest
python3 -m pytest tests -vv
Contributing
Citing
If you use simcardems in your research, please cite it as follows
@article{Finsberg2023,
doi = {10.21105/joss.04753},
url = {https://doi.org/10.21105/joss.04753},
year = {2023},
publisher = {The Open Journal},
volume = {8},
number = {81},
pages = {4753},
author = {Henrik Nicolay Topnes Finsberg and Ilsbeth Gerarda Maria van Herck and Cécile Daversin-Catty and Hermenegild Arevalo and Samuel Wall},
title = {simcardems: A FEniCS-based cardiac electro-mechanics solver},
journal = {Journal of Open Source Software}
}
Known issues
- Issue with h5py, see https://github.com/ComputationalPhysiology/pulse#known-issues
Authors
- Henrik Finsberg (henriknf@simula.no)
- Ilsbeth van Herck (ilse@simula.no)
- Cécile Daversin-Catty (cecile@simula.no)
1 maintainer
Metadata
1 maintainer
Release files for simcardems 2023.7.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| simcardems-2023.7.1.tar.gz | 120.4 kB | Without provenance | Details for simcardems-2023.7.1.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| simcardems-2023.7.1-py3-none-any.whl | Python 3 | none | any | Details for simcardems-2023.7.1-py3-none-any.whl |
Total release size: 247.1 kB
Release files / simcardems-2023.7.1.tar.gz
| Download URL | simcardems-2023.7.1.tar.gz |
|---|---|
| Size | 120.4 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
9b1c321eeab8f5b514e6e10df7e3c6abcec549c1c9778a18dba6b33c0c3a9aec
|
|
BLAKE2b-256 checksum How to use checksums |
7285d4618106e2bdd554ad4631c733ab68c58c0025823e59a63a67351d30439a
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.11.6
|
Release files / simcardems-2023.7.1-py3-none-any.whl
| Download URL | simcardems-2023.7.1-py3-none-any.whl |
|---|---|
| Size | 126.8 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
ae7fcb6b6a2639e220d1d5d0460c2b7337e6b60e0702f8ae55fdf9fe5bfcd545
|
|
BLAKE2b-256 checksum How to use checksums |
7f3211b06772a6d75f5b0e382e3483c76b7851b4d08f91df747247a25f756e1a
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.11.6
|
Security for simcardems 2023.7.1
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
