Simula Cardiac electromechanics solver
Project description
Simula Cardiac Electro-Mechanics Solver
simcardems is a FEniCS-based cardiac electro-mechanics solver and is developed as a part of the SimCardio Test project. The solver depends on pulse and cbcbeat.
Installation
Getting started
See Quickstart guide
Documentation
Documentation is hosted at http://computationalphysiology.github.io/simcardems.
To build the documentation locally should should first install the documentation requirements
python -m pip install ".[docs]"
Then should should run the sphinx-apidoc command (from the root directory)
sphinx-apidoc -o docs/source src/simcardems
and finally build the html
cd docs
make html
Now open docs/build/html/index.html to see the documentation.
Automated test
Tests are provided in the folder tests. You can run the tests with pytest
python3 -m pytest tests -vv
Contributing
See CONTRIBUTING.md
Known issues
- Issue with h5py, see https://github.com/ComputationalPhysiology/pulse#known-issues
Authors
- Henrik Finsberg (henriknf@simula.no)
- Ilsbeth van Herck (ilse@simula.no)
- Cécile Daversin-Catty (cecile@simula.no)
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