Simula Cardiac electromechanics solver
Project description
Simula Cardiac Electro-Mechanics Solver
simcardems
is a FEniCS-based cardiac electro-mechanics solver and is developed as a part of the SimCardio Test project. The solver depends on pulse
and cbcbeat
.
Installation
Getting started
See the demos
Documentation
Documentation is hosted at http://computationalphysiology.github.io/simcardems.
Automated test
Tests are provided in the folder tests. You can run the tests with pytest
python3 -m pytest tests -vv
Contributing
Citing
If you use simcardems
in your research, please cite it as follows
@article{Finsberg2023,
doi = {10.21105/joss.04753},
url = {https://doi.org/10.21105/joss.04753},
year = {2023},
publisher = {The Open Journal},
volume = {8},
number = {81},
pages = {4753},
author = {Henrik Nicolay Topnes Finsberg and Ilsbeth Gerarda Maria van Herck and Cécile Daversin-Catty and Hermenegild Arevalo and Samuel Wall},
title = {simcardems: A FEniCS-based cardiac electro-mechanics solver},
journal = {Journal of Open Source Software}
}
Known issues
- Issue with h5py, see https://github.com/ComputationalPhysiology/pulse#known-issues
Authors
- Henrik Finsberg (henriknf@simula.no)
- Ilsbeth van Herck (ilse@simula.no)
- Cécile Daversin-Catty (cecile@simula.no)
Project details
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