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A simple brain viewer using matplotlib

Project description

SimpleBrainViewer

A simple brain viewer using matplotlib

What is this?

Pretty self-explanatory... It's a simple brain viewer written with matplotlib. Useful if you just want to view a volume quickly in python.

Will add 4D volume viewing and voxel selection soon...

Usage

You can call BrainViewer from python or the command line (via nifti file or any other nibabel compatible format):

"""
  Example
"""
import nibabel as nib
from simplebrainviewer import *
import matplotlib.pyplot as plt

# load a volume
data = nib.load('/a/nifti/file').get_fdata()

# plot the data
simplebrainviewer.plot_brain(data)

Command Line Usage
usage: brainviewer.py [-h] volume

View a brain volume (Only does 3D, no 4D yet!)

positional arguments:
  volume      brain volume to view

optional arguments:
  -h, --help  show this help message and exit

Project details


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This version

0.1

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