Skip to main content

An implementation of [singleCellHaystack](https://github.com/alexisvdb/singleCellHaystack) in python.

Project description

singleCellHaystack-py

Lifecycle:beta

This repository contains a python implementation of singleCellHaystack.

Installation

For now, clone this repository, then run the following from the repository folder:

pip install .

Example

import scanpy as sc
import singleCellHaystack as hs

adata = sc.read_h5ad("data.h5ad")

res = hs.haystack(adata)

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

singleCellHaystack-0.0.1.tar.gz (9.0 kB view hashes)

Uploaded Source

Built Distribution

singleCellHaystack-0.0.1-py3-none-any.whl (10.8 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page