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A runner script for pipelines using Singularity containers

Project description



singularity-pipeline is a Python-based tool for describing, building and running Singularity container-based pipelines.

This tool has been built as part of the Pipeline Interoperability initiative of the EnhanceR project.



Note that the script is still rough around the edges.


pip install singularity-pipeline


See usage instructions with

singularity-pipeline help

Project details

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