Skip to main content

A runner script for pipelines using Singularity containers

Project description



singularity-pipeline is a Python-based tool for describing, building and running Singularity container-based pipelines.

This tool has been built as part of the Pipeline Interoperability initiative of the EnhanceR project.



Note that the script is still rough around the edges.


pip install singularity-pipeline


See usage instructions with

singularity-pipeline help

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

singularity-pipeline-0.2.1.tar.gz (7.5 kB view hashes)

Uploaded source

Built Distribution

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page