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A runner script for pipelines using Singularity containers

Project description

singularity-pipeline

Description

singularity-pipeline is a Python-based tool for describing, building and running Singularity container-based pipelines.

This tool has been built as part of the Pipeline Interoperability initiative of the EnhanceR project.

Source: https://github.com/kav2k/singularity-pipeline/

PyPi: https://pypi.python.org/pypi/singularity-pipeline/

Note that the script is still rough around the edges.

Installing

pip install singularity-pipeline

Running

See usage instructions with

singularity-pipeline help

Project details


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Files for singularity-pipeline, version 0.2.1
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