A runner script for pipelines using Singularity containers
Project description
singularity-pipeline
Description
singularity-pipeline is a Python-based tool for describing, building and running Singularity container-based pipelines.
This tool has been built as part of the Pipeline Interoperability initiative of the EnhanceR project.
Source: https://github.com/kav2k/singularity-pipeline/
PyPi: https://pypi.python.org/pypi/singularity-pipeline/
Note that the script is still rough around the edges.
Installing
pip install singularity-pipeline
Running
See usage instructions with
singularity-pipeline help
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
File details
Details for the file singularity-pipeline-0.2.1.tar.gz.
File metadata
- Download URL: singularity-pipeline-0.2.1.tar.gz
- Upload date:
- Size: 7.5 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 3dd2aa54e8b221a8aa58818fbd03ace128d40514704091123586f1d441333505 |
|
| MD5 | 56d2cf7e9f4898702fcb31824603fdd5 |
|
| BLAKE2b-256 | 7cb9a4903bc03b2240d50beb5f0d25ebb3cb45b26fabe42ca0163e0f7f36f5df |
File details
Details for the file singularity_pipeline-0.2.1-py3-none-any.whl.
File metadata
- Download URL: singularity_pipeline-0.2.1-py3-none-any.whl
- Upload date:
- Size: 9.4 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | cbd8116e210f512776134ea9da2408e9d4f1c41df5158e4e29db6ad1cd4741af |
|
| MD5 | bc8fc770e5163d2766df5dc9504ea82e |
|
| BLAKE2b-256 | 3a940cfc7558a19bbdf3d54acdbaec870f4eda9224d924058da5eeed9c187d4c |
