A runner script for pipelines using Singularity containers
Project description
singularity-pipeline
Description
singularity-pipeline is a Python-based tool for describing, building and running Singularity container-based pipelines.
This tool has been built as part of the Pipeline Interoperability initiative of the EnhanceR project.
Source: https://github.com/kav2k/singularity-pipeline/
PyPi: https://pypi.python.org/pypi/singularity-pipeline/
Note that the script is still rough around the edges.
Installing
pip install singularity-pipeline
Running
See usage instructions with
singularity-pipeline help
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