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Tools for single-cell data processing

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Sinto is a toolkit for processing aligned single-cell data. Sinto includes functions to:

  • Subset reads from a BAM file by cell barcode
  • Create a scATAC-seq fragments file from a BAM file
  • Add read tags to a BAM file according to cell barcode information
  • Add read groups based on read tags
  • Copy or move read tags to another read tag
  • Copy cell barcodes to/from read names or read tags
  • Add cell barcodes to FASTQ read names

Read the documentation at https://timoast.github.io/sinto

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