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six-frame genome-inferred libraries for LC-MS/MS

Project description

Sixgill

Six-frame Genome-Inferred Libraries for LC-MS/MS

What is Sixgill?

Sixgill is a tool for using shotgun metagenomics sequencing reads to construct databases of ‘metapeptides’: short protein fragments for database search of LC-MS/MS metaproteomics data. A comprehensive set of resources for building and using metapeptide databases is here.

Required Python versions

Sixgill supports Python 2.7

Project dependencies

Sixgill uses the following python packages:

Installation

  • Get pip, if you don’t have it yet.

  • Install Sixgill and its dependencies:

    pip install biopython pysam sixgill

Documentation

The Sixgill wiki contains more detailed information on using Sixgill.

Project details


Release history Release notifications

This version
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0.2.4

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0.2.3

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0.2.2

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0.2.1

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0.2.0

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0.1.3

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0.1.2

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0.1.0

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Filename, size & hash SHA256 hash help File type Python version Upload date
sixgill-0.2.4.tar.gz (12.6 kB) Copy SHA256 hash SHA256 Source None Oct 11, 2016

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