six-frame genome-inferred libraries for LC-MS/MS
Project description
Sixgill
Six-frame Genome-Inferred Libraries for LC-MS/MS
What is Sixgill?
Sixgill is a tool for using shotgun metagenomics sequencing reads to construct databases of ‘metapeptides’: short protein fragments for database search of LC-MS/MS metaproteomics data. A comprehensive set of resources for building and using metapeptide databases is here.
Required Python versions
Sixgill supports Python 2.7
Project dependencies
Sixgill uses the following python packages:
Installation
Get pip, if you don’t have it yet.
Install Sixgill and its dependencies:
pip install biopython pysam sixgill
Documentation
The Sixgill wiki contains more detailed information on using Sixgill.
