PythonUtils

A module containing common scripts that I use in my research. Documentation available at https://seankmartin.github.io/PythonUtils/html/skm_pyutils/index.html.

Installation

pip install skm_pyutils

Update documentation

pdoc --html -o "docs\html" skm_pyutils --force

Command line running

pdf-merge -h
dir-list -h

For example

pdf-merge -d . -r -o merged.pdf
dir-list . -r -e .txt -o txt_file_list.txt
copy-files input_dir output_dir -re .*results.*.png

Modules

• array : Small numpy style functions.
• config : Config utils, e.g read a full .py python file as configuration using exec.
• log: Logging utils, e.g. logging exceptions to disk and stdout.
• merge : combine csv files together, or grab files of a particular type from recursive folders and merge into one folder
• path: Path utils, e.g. finding all files in a directory with given extension recursively.
• pdf : PDF utils, e.g. merging all PDFs files in a directory, or pdfs with given pages
• plot : Plotting utils, e.g. automatically handled gridding of plots, with color management.
• print : Printing utils, e.g. pretty printing a dictionary, or HDF5 file.
• profile : Code profiling, e.g. profiling code for runtime performance.
• save : Saving outputs, e.g. a full dictionary recursively.
• stats : Hyptothesis tests etc.
• tables : Pandas dataframe utils.