Skip to main content

Small Particle Detection, a shapes library-based object detector.

Project description

Small Particle Detection

An algorithm primarily design to detect objects whose sizes aren’t larger a few pixels (particles) on fluorescence microscopy images.

It is an simplified version of marked point process.

Requirements

SPADE has only been tested with Python 3.5 but should work with older versions. The only other requirement is Numpy. In order to use SPADE to its full extent, we recommend installing the scikit-image package and the full scipy ecosystem.

Usage

You can install the package using PIP. The main function, spade2d, is in the spade.detection_2d module. It takes an image, a shapes library and a threshold as input. See the examples in the example folder for more information.

Also provided is a command line interface, that can be used as following:

::
python -m spade.cli

Launch this command with -h for more information on its usage.

Take a look at the ‘example’ to see how to use SPADE from within a python script.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for small-particle-detection, version 0.0.1a2
Filename, size File type Python version Upload date Hashes
Filename, size small-particle-detection-0.0.1a2.tar.gz (89.1 kB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring DigiCert DigiCert EV certificate Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page