Skip to main content

Python module of the Smoldyn simulator

Project description

C/C++ CI PyPI version Documentation Status

Smoldyn

Smoldyn is a particle-based biochemical simulator for modeling molecular diffusion, surface interactions, and chemical reactions.

The Smoldyn webpage is at http://www.smoldyn.org. Go there to learn about Smoldyn, download the latest release, etc. This repository is here so that developers can collaborate on the code. This is the official Smoldyn repository, run by the main Smoldyn author, Steve Andrews. (It was called Smoldyn-official for a while, but got renamed to just Smoldyn.)

I welcome new contributions to the code. However, I also want to maintain Smoldyn's current design philosophy, so please contact me before writing new code so that we can discuss how additions can be made most useful. I am at steven.s.andrews@gmail.com.

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distributions

No source distribution files available for this release.See tutorial on generating distribution archives.

Built Distributions

smoldyn-2.65.dev20210421-cp39-cp39-win_amd64.whl (820.7 kB view details)

Uploaded CPython 3.9 Windows x86-64

smoldyn-2.65.dev20210421-cp39-cp39-manylinux2010_x86_64.whl (1.7 MB view details)

Uploaded CPython 3.9 manylinux: glibc 2.12+ x86-64

smoldyn-2.65.dev20210421-cp39-cp39-macosx_10_15_x86_64.whl (1.1 MB view details)

Uploaded CPython 3.9 macOS 10.15+ x86-64

smoldyn-2.65.dev20210421-cp38-cp38-win_amd64.whl (820.4 kB view details)

Uploaded CPython 3.8 Windows x86-64

smoldyn-2.65.dev20210421-cp38-cp38-manylinux2010_x86_64.whl (2.5 MB view details)

Uploaded CPython 3.8 manylinux: glibc 2.12+ x86-64

smoldyn-2.65.dev20210421-cp38-cp38-macosx_10_15_x86_64.whl (1.1 MB view details)

Uploaded CPython 3.8 macOS 10.15+ x86-64

smoldyn-2.65.dev20210421-cp37-cp37m-win_amd64.whl (819.4 kB view details)

Uploaded CPython 3.7m Windows x86-64

smoldyn-2.65.dev20210421-cp37-cp37m-manylinux2010_x86_64.whl (3.3 MB view details)

Uploaded CPython 3.7m manylinux: glibc 2.12+ x86-64

smoldyn-2.65.dev20210421-cp37-cp37m-macosx_10_15_x86_64.whl (1.0 MB view details)

Uploaded CPython 3.7m macOS 10.15+ x86-64

File details

Details for the file smoldyn-2.65.dev20210421-cp39-cp39-win_amd64.whl.

File metadata

  • Download URL: smoldyn-2.65.dev20210421-cp39-cp39-win_amd64.whl
  • Upload date:
  • Size: 820.7 kB
  • Tags: CPython 3.9, Windows x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/4.0.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.60.0 CPython/3.9.4

File hashes

Hashes for smoldyn-2.65.dev20210421-cp39-cp39-win_amd64.whl
Algorithm Hash digest
SHA256 5026570fab0d8292cb3f3ddf95171cc37c33b5675bf20711a4ccce9ec7646c7c
MD5 5d3797fce9e397daa86c2b2d4735f1e5
BLAKE2b-256 8c51b6145710bed6f288e786a15e5702156ebe514d8f692e3f067abdbf8762c7

See more details on using hashes here.

File details

Details for the file smoldyn-2.65.dev20210421-cp39-cp39-manylinux2010_x86_64.whl.

File metadata

  • Download URL: smoldyn-2.65.dev20210421-cp39-cp39-manylinux2010_x86_64.whl
  • Upload date:
  • Size: 1.7 MB
  • Tags: CPython 3.9, manylinux: glibc 2.12+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/4.0.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.60.0 CPython/3.8.9

File hashes

Hashes for smoldyn-2.65.dev20210421-cp39-cp39-manylinux2010_x86_64.whl
Algorithm Hash digest
SHA256 0ff2e43b5865bdb2c55dc729ac643e6951a7019221d71039f370ce2b39c24458
MD5 26231d17b952a8900f08ca4d136d506f
BLAKE2b-256 ef0caa23eb4af7192e9593d101e11c15ad4905f1caf3ad94b48d397cf3d4ac09

See more details on using hashes here.

File details

Details for the file smoldyn-2.65.dev20210421-cp39-cp39-macosx_10_15_x86_64.whl.

File metadata

  • Download URL: smoldyn-2.65.dev20210421-cp39-cp39-macosx_10_15_x86_64.whl
  • Upload date:
  • Size: 1.1 MB
  • Tags: CPython 3.9, macOS 10.15+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/4.0.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.60.0 CPython/3.9.4

File hashes

Hashes for smoldyn-2.65.dev20210421-cp39-cp39-macosx_10_15_x86_64.whl
Algorithm Hash digest
SHA256 7cbbc65f7c2042a3a00e7ea7839e92051259ab8ea84f63503a41eef30db560a6
MD5 7f9f51c71294ecaf84e9495000fbf389
BLAKE2b-256 a8fb02a4f67eb2307fa78b320346a3a48a53e422db1a27313aed8eead714efb5

See more details on using hashes here.

File details

Details for the file smoldyn-2.65.dev20210421-cp38-cp38-win_amd64.whl.

File metadata

  • Download URL: smoldyn-2.65.dev20210421-cp38-cp38-win_amd64.whl
  • Upload date:
  • Size: 820.4 kB
  • Tags: CPython 3.8, Windows x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/4.0.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.60.0 CPython/3.8.9

File hashes

Hashes for smoldyn-2.65.dev20210421-cp38-cp38-win_amd64.whl
Algorithm Hash digest
SHA256 bd6ad38b60c7467e98fcc64bb85b1330fb30f7b1d44efddb7fba6a64d845e219
MD5 65b60be8a0b23e95c13e8e8720128f40
BLAKE2b-256 6c1a066a44c7a2cf6211f2ad57f0d5ef780be3e54187bf3d227bf0520dcf3981

See more details on using hashes here.

File details

Details for the file smoldyn-2.65.dev20210421-cp38-cp38-manylinux2010_x86_64.whl.

File metadata

  • Download URL: smoldyn-2.65.dev20210421-cp38-cp38-manylinux2010_x86_64.whl
  • Upload date:
  • Size: 2.5 MB
  • Tags: CPython 3.8, manylinux: glibc 2.12+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/4.0.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.60.0 CPython/3.8.9

File hashes

Hashes for smoldyn-2.65.dev20210421-cp38-cp38-manylinux2010_x86_64.whl
Algorithm Hash digest
SHA256 149ead598bffd95e8c5657e4442a8dd2043d626cc48b2e4f2bd476f9a8b33194
MD5 0544a390440ee5552187c92a2eddc440
BLAKE2b-256 a78b20b0636bdf7c16e1761492e033c7ac8e8634342b5b369dc802dc219c18b0

See more details on using hashes here.

File details

Details for the file smoldyn-2.65.dev20210421-cp38-cp38-macosx_10_15_x86_64.whl.

File metadata

  • Download URL: smoldyn-2.65.dev20210421-cp38-cp38-macosx_10_15_x86_64.whl
  • Upload date:
  • Size: 1.1 MB
  • Tags: CPython 3.8, macOS 10.15+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/4.0.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.60.0 CPython/3.8.9

File hashes

Hashes for smoldyn-2.65.dev20210421-cp38-cp38-macosx_10_15_x86_64.whl
Algorithm Hash digest
SHA256 f193d5ffc806a3c9740bb547d59608f4b2f316e15e397652db84c6339409303e
MD5 40cd3962c5e82799c5ed5a907cc4c710
BLAKE2b-256 f00067cf409a88554c735f08bd49f8e8b14c953e4c31930a8657aee8190b37e9

See more details on using hashes here.

File details

Details for the file smoldyn-2.65.dev20210421-cp37-cp37m-win_amd64.whl.

File metadata

  • Download URL: smoldyn-2.65.dev20210421-cp37-cp37m-win_amd64.whl
  • Upload date:
  • Size: 819.4 kB
  • Tags: CPython 3.7m, Windows x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/3.10.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.60.0 CPython/3.7.9

File hashes

Hashes for smoldyn-2.65.dev20210421-cp37-cp37m-win_amd64.whl
Algorithm Hash digest
SHA256 ea7c27652e7da769252cd8bfc574447f08c8fb3ad272d9f2d94a56ad02e98b58
MD5 a1128b9bcd9668d2cd64e9b0212f90f2
BLAKE2b-256 219ff5e1c4e28e04d6fd403f38c10b4cb5de1f4d7dbc986f26b16a7f38840625

See more details on using hashes here.

File details

Details for the file smoldyn-2.65.dev20210421-cp37-cp37m-manylinux2010_x86_64.whl.

File metadata

  • Download URL: smoldyn-2.65.dev20210421-cp37-cp37m-manylinux2010_x86_64.whl
  • Upload date:
  • Size: 3.3 MB
  • Tags: CPython 3.7m, manylinux: glibc 2.12+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/4.0.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.60.0 CPython/3.8.9

File hashes

Hashes for smoldyn-2.65.dev20210421-cp37-cp37m-manylinux2010_x86_64.whl
Algorithm Hash digest
SHA256 a84fb476868187dfc47df853da19a20a36152fa69ee9a9d3a01792e0cda26e4d
MD5 b977f4bd9e99337cf7502f7f959e7bbf
BLAKE2b-256 4ff8e3695e32b3ea32251b57901dde79668a2a5e25b547ea927ab0587c746deb

See more details on using hashes here.

File details

Details for the file smoldyn-2.65.dev20210421-cp37-cp37m-macosx_10_15_x86_64.whl.

File metadata

  • Download URL: smoldyn-2.65.dev20210421-cp37-cp37m-macosx_10_15_x86_64.whl
  • Upload date:
  • Size: 1.0 MB
  • Tags: CPython 3.7m, macOS 10.15+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.4.1 importlib_metadata/4.0.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.60.0 CPython/3.7.10

File hashes

Hashes for smoldyn-2.65.dev20210421-cp37-cp37m-macosx_10_15_x86_64.whl
Algorithm Hash digest
SHA256 06efe1f77ec52e1251f11260ce3e3bbd3256169218c3189fb42ec1b75a96da61
MD5 85d49eb1340e6980ff923a4d39d5b003
BLAKE2b-256 ddb4b41b693ae58651baabb1f80e58f385e2cb333fb49a0fdc0ef3561cf7d857

See more details on using hashes here.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page