BIDS integration into snakemake workflows
Project description
snakebids
Snakemake + BIDS
This package allows you to build BIDS Apps using Snakemake. It offers:
- Flexible data grabbing with PyBIDS, configurable solely by config file entries
- Helper function for creating BIDS paths inside Snakemake workflows/rules
- Command-line invocation of snakemake workflows with BIDS App compliance
- Configurable argument parsing specified using the Snakemake workflow config
- Execution either as command-line BIDS apps or via snakemake executable
See the example template BIDS app in the template_app subfolder for an example of usage.
Documentation under construction.
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