BIDS integration into snakemake workflows
Project description
Snakemake + BIDS
This package allows you to build BIDS Apps using Snakemake. It offers:
Flexible data grabbing with PyBIDS, configurable solely by config file entries
Helper function for creating BIDS paths inside Snakemake workflows/rules
Command-line invocation of snakemake workflows with BIDS App compliance
Configurable argument parsing specified using the Snakemake workflow config
Execution either as command-line BIDS apps or via snakemake executable
To create an app, use the cookiecutter here: http://github.com/akhanf/snakebids-app
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
snakebids-0.3.10.tar.gz
(23.6 kB
view hashes)
Built Distribution
snakebids-0.3.10-py3-none-any.whl
(29.5 kB
view hashes)
Close
Hashes for snakebids-0.3.10-py3-none-any.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | c5aebecaeb089ffcce5380308ec84894174eb0a3b90dc5bef10e396ea2f49bfc |
|
| MD5 | 1102317e6351a20544b0aedc94509475 |
|
| BLAKE2b-256 | a8d6aae06995119e79647560e80540ccf6200cc39071566e57d5f70ba5cec237 |
