BIDS integration into snakemake workflows

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  • License: MIT License
  • Author: Ali Khan
  • Requires: Python >=3.7
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Snakemake + BIDS

This package allows you to build BIDS Apps using Snakemake. It offers:

  • Flexible data grabbing with PyBIDS, configurable solely by config file entries

  • Helper function for creating BIDS paths inside Snakemake workflows/rules

  • Command-line invocation of snakemake workflows with BIDS App compliance

  • Configurable argument parsing specified using the Snakemake workflow config

  • Execution either as command-line BIDS apps or via snakemake executable

Project details

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Avatar for akhanf from gravatar.com akhanf

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  • License: MIT License
  • Author: Ali Khan
  • Requires: Python >=3.7
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0.13.1

0.13.0

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0.11.2

0.11.1

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0.10.2

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0.3.14

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