BIDS integration into snakemake workflows
Project description
Snakemake + BIDS
This package allows you to build BIDS Apps using Snakemake. It offers:
Flexible data grabbing with PyBIDS, configurable solely by config file entries
Helper function for creating BIDS paths inside Snakemake workflows/rules
Command-line invocation of snakemake workflows with BIDS App compliance
Configurable argument parsing specified using the Snakemake workflow config
Execution either as command-line BIDS apps or via snakemake executable
To create an app, use the cookiecutter here: http://github.com/akhanf/snakebids-app
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
snakebids-0.3.2.tar.gz
(22.5 kB
view hashes)
Built Distribution
snakebids-0.3.2-py3-none-any.whl
(29.1 kB
view hashes)
Close
Hashes for snakebids-0.3.2-py3-none-any.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | ae2e1f24895a829e954b82dac23fdd7e1590a5e69a8aa361ed9c4e6861f53f54 |
|
| MD5 | e0716a0656181b84fa8991308b937e9f |
|
| BLAKE2b-256 | e0183e450b353e95c7d0b64a571f82ea5242a4ba10ec3ff89faf24e28bebb24a |
