BIDS integration into snakemake workflows
Project description
Snakemake + BIDS
This package allows you to build BIDS Apps using Snakemake. It offers:
Flexible data grabbing with PyBIDS, configurable solely by config file entries
Helper function for creating BIDS paths inside Snakemake workflows/rules
Command-line invocation of snakemake workflows with BIDS App compliance
Configurable argument parsing specified using the Snakemake workflow config
Execution either as command-line BIDS apps or via snakemake executable
To create an app, use the cookiecutter here: http://github.com/akhanf/snakebids-app
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
snakebids-0.3.9.tar.gz
(22.8 kB
view hashes)
Built Distribution
snakebids-0.3.9-py3-none-any.whl
(29.4 kB
view hashes)
Close
Hashes for snakebids-0.3.9-py3-none-any.whl
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 | 9b7d0ea8dc2baac67999d2046768b7b7735c666357aa5579711297f965d07b5e |
|
| MD5 | dc2da16a86615d30f8215ce936332dce |
|
| BLAKE2b-256 | 82d2ea0f720e14a4084c278636982aeffaa4371502418526fbd0248bd7210749 |
