Build systems like make are frequently used to create complicated workflows, e.g. in bioninformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific language (DSL) in python style, together with a fast and comfortable execution environment.

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Snakemake – a pythonic workflow system

Build systems like GNU Make are frequently used to create complicated workflows, e.g. in bioinformatics. This project aims to reduce the complexity of creating workflows by providing a clean and modern domain specific specification language (DSL) in python style, together with a fast and comfortable execution environment.

Copyright (c) 2013 Johannes Köster <johannes.koester@tu-dortmund.de> (see LICENSE)

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Release history Release notifications | RSS feed

8.25.2

8.25.1

8.25.0

8.24.1

8.24.0

8.23.2

8.23.1

8.23.0

8.22.0

8.21.0

8.20.7

8.20.6

8.20.5

8.20.4

8.20.3

8.20.2

8.20.1

8.20.0

8.19.3

8.19.2

8.19.1

8.19.0

8.18.2

8.18.1

8.18.0

8.17.0

8.16.0

8.15.2

8.15.1

8.15.0

8.14.0

8.13.0

8.12.0

8.11.6

8.11.5

8.11.4

8.11.3

8.11.2

8.11.1

8.11.0

8.10.8

8.10.7

8.10.6

8.10.5

8.10.4

8.10.3

8.10.2

8.10.1

8.10.0

8.9.0

8.8.0

8.7.0

8.6.0

8.5.5

8.5.4

8.5.3

8.5.2

8.5.1

8.5.0

8.4.12

8.4.11

8.4.10

8.4.9

8.4.8

8.4.7

8.4.6

8.4.5

8.4.4

8.4.3

8.4.2

8.4.1

8.4.0

8.3.2

8.3.1

8.3.0

8.2.4

8.2.3

8.2.2

8.2.1

8.2.0

8.1.3

8.1.2

8.1.1

8.1.0

8.0.1

8.0.0

7.32.4

7.32.3

7.32.2

7.32.1

7.32.0

7.31.1

7.31.0

7.30.2

7.30.1

7.30.0

7.29.0

7.28.3

7.28.2

7.28.1

7.28.0

7.26.0

7.25.4

7.25.3

7.25.2

7.25.1

7.25.0

7.24.2

7.24.1

7.24.0

7.23.1

7.23.0

7.22.0

7.21.0

7.20.0

7.19.1

7.19.0

7.18.2

7.18.1

7.18.0

7.17.1

7.17.0

7.16.2

7.16.1

7.16.0

7.15.2

7.15.1

7.15.0

7.14.2

7.14.1

7.14.0

7.13.0

7.12.1

7.12.0

7.11.0

7.10.0

7.9.0

7.8.5

7.8.3

7.8.2

7.8.1

7.8.0

7.7.0

7.6.2

7.6.1

7.6.0

7.5.0

7.4.0

7.3.8

7.3.7

7.3.6

7.3.5

7.3.4

7.3.3

7.3.2

7.3.1

7.3.0

7.2.1

7.2.0

7.1.1

7.1.0

7.0.4

7.0.3

7.0.2

7.0.1

7.0.0

6.15.5

6.15.4

6.15.3

6.15.2

6.15.1

6.15.0

6.14.0

6.13.1

6.13.0

6.12.3

6.12.2

6.12.1

6.12.0

6.11.1

6.11.0

6.10.0

6.9.1

6.9.0

6.8.2

6.8.1

6.8.0

6.7.0

6.6.1

6.6.0

6.5.5

6.5.3

6.5.2

6.5.1

6.5.0

6.4.1

6.4.0

6.3.0

6.2.1

6.2.0

6.1.2

6.1.1

6.1.0

6.0.5

6.0.4

6.0.3

6.0.2

6.0.1

6.0.0

5.32.2

5.32.1

5.32.0

5.31.1

5.31.0

5.30.2

5.30.1

5.30.0

5.29.0

5.28.0

5.27.4

5.27.3

5.27.2

5.26.1

5.26.0

5.25.0

5.24.2

5.24.1

5.24.0

5.23.0

5.22.1

5.22.0

5.21.0

5.20.1

5.20.0

5.19.3

5.19.2

5.19.1

5.19.0

5.18.1

5.18.0

5.17.0

5.16.0

5.15.0

5.14.0

5.13.0

5.12.3

5.12.2

5.12.1

5.12.0

5.11.2

5.11.1

5.11.0

5.10.0

5.9.1

5.9.0

5.8.2

5.8.1

5.8.0

5.7.4

5.7.1

5.7.0

5.6.0

5.5.4

5.5.3

5.5.2

5.5.1

5.5.0

5.4.5

5.4.4

5.4.3

5.4.2

5.4.1

5.4.0

5.3.1

5.3.0

5.2.4

5.2.3

5.2.2

5.2.1

5.2.0

5.1.5

5.1.4

5.1.3

5.1.2

5.1.1

5.0.0

4.8.1

4.8.0

4.7.0

4.6.0

4.5.1

4.5.0

4.4.0

4.3.1

4.3.0

4.2.0

4.1.0

4.0.0

3.13.3

3.13.2

3.13.1

3.13.0

3.12.0

3.11.2

3.11.1

3.11.0

3.10.2

3.10.1

3.10.0

3.9.1

3.9.0

3.8.2

3.8.1

3.8.0

3.7.1

3.7.0

3.6.1

3.6.0

3.5.5

3.5.4

3.5.3

3.5.2

3.5.1

3.5.0

3.4.2

3.4.1

3.4

3.3

3.2.2

3.2.1

3.2

3.1.1

3.1

3.0

3.0b1 pre-release

2.5.2.2

2.5.2.1

2.5.2

2.5.1

This version

2.5

2.4.9

2.4.8

2.4.7.1

2.4.7

2.4.6

2.4.5

2.4.4

2.4.3

2.4.2

2.4.1

2.4

2.3

2.2.2

2.2.1

2.2

2.1.1

2.1

2.0

1.2.3

1.2.1

1.2

1.1.4

1.1.3

1.1.2

1.1.1

1.1

1.0.2

1.0.1

1.0

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