Convert Snapgene *.dna files dict/json/biopython.
Project description
SnapGene Reader
===============
SnapGene Reader is a Python library to parse Snapgene ``*.dna`` files into dictionnaries or Biopython SeqRecords:
.. code:: python
from snapgene_reader import snapgene_file_to_dict, snapgene_file_to_seqrecord
file_path = './snap_gene_file.dna'
dictionnary = snapgene_file_to_dict(filepath)
seqrecord = snapgene_file_to_seqrecord(filepath)
Installation
------------
Install with PIP:
.. code:: bash
pip install snapgene_reader
Test with Pytest:
.. code:: bash
python -m pytest
(or simply "pytest")
Licence = MIT
-------------
SnapGene Reader is an open-source software originally written by `Isaac Luo <https://github.com/IsaacLuo>`_ at the Edinburgh Genome Foundry and released on Github <https://github.com/Edinburgh-Genome-Foundry/SnapGeneReader>`_ under the MIT licence (¢ Edinburg Genome Foundry).
```
===============
SnapGene Reader is a Python library to parse Snapgene ``*.dna`` files into dictionnaries or Biopython SeqRecords:
.. code:: python
from snapgene_reader import snapgene_file_to_dict, snapgene_file_to_seqrecord
file_path = './snap_gene_file.dna'
dictionnary = snapgene_file_to_dict(filepath)
seqrecord = snapgene_file_to_seqrecord(filepath)
Installation
------------
Install with PIP:
.. code:: bash
pip install snapgene_reader
Test with Pytest:
.. code:: bash
python -m pytest
(or simply "pytest")
Licence = MIT
-------------
SnapGene Reader is an open-source software originally written by `Isaac Luo <https://github.com/IsaacLuo>`_ at the Edinburgh Genome Foundry and released on Github <https://github.com/Edinburgh-Genome-Foundry/SnapGeneReader>`_ under the MIT licence (¢ Edinburg Genome Foundry).
```
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
File details
Details for the file snapgene_reader-0.1.12.tar.gz
.
File metadata
- Download URL: snapgene_reader-0.1.12.tar.gz
- Upload date:
- Size: 3.2 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
File hashes
Algorithm | Hash digest | |
---|---|---|
SHA256 | 5cd5f3123751763186eeef3a78aa3dedb22b14dfe612940fd2e66513231a287f |
|
MD5 | 3cef58182bcd270bb6a90ce3f65bf6df |
|
BLAKE2b-256 | d881e166e25993bc6f6ece0adec604ecb8ad965d354fb22f32b7446ce423acd8 |