SNF2JSON
This tool is a simple file converter that takes a Sniffles (SNF) file and converts it into a JSON like object (SNFJ). The purpose of this converter is to make it easier to work with the Sniffles file format in other tools such as Spectre, which is a long read copy number variation (CNV) caller.
Functionality: To preserve the original data structure of the SNF file, the pickled objects withing the file are converted into a JSON like object structure, which can easily be loaded into a Python dictionary.
Installation:
pip install snf2json
Usage:
For compression use the .gz extension in the output filename.
snf2json <sample.snf> <new_sample.snfj.gz>
or
snf2json <sample.snf> <new_sample.snfj>
1 maintainer
Metadata
1 maintainer
Release files for snf2json 0.1
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| snf2json-0.1.tar.gz | 4.4 kB | Without provenance | Details for snf2json-0.1.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| snf2json-0.1-py3-none-any.whl | Python 3 | none | any | Details for snf2json-0.1-py3-none-any.whl |
Total release size: 9.1 kB
Release files / snf2json-0.1.tar.gz
| Download URL | snf2json-0.1.tar.gz |
|---|---|
| Size | 4.4 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/5.0.0 CPython/3.12.2
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Release files / snf2json-0.1-py3-none-any.whl
| Download URL | snf2json-0.1-py3-none-any.whl |
|---|---|
| Size | 4.6 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/5.0.0 CPython/3.12.2
|
Security for snf2json 0.1
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No provenance found
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