snowball-extractor 1.0.5

Snowball: Extracting Relations from Large Plain-Text Collections

           

Snowball: Extracting Relations from Large Plain-Text Collections

An implementation of Snowball, a relationship extraction system that uses a bootstrapping/semi-supervised approach, it relies on an initial set of seeds, i.e. paris of named-entities representing relationship type to be extracted.

Extracting companies headquarters:

The input text needs to have the named-entities tagged, like show in the example bellow:

The tech company <ORG>Soundcloud</ORG> is based in <LOC>Berlin</LOC>, capital of Germany.
<ORG>Pfizer</ORG> says it has hired <ORG>Morgan Stanley</ORG> to conduct the review.
<ORG>Allianz</ORG>, based in <LOC>Munich</LOC>, said net income rose to EUR 1.32 billion.
<LOC>Switzerland</LOC> and <LOC>South Africa</LOC> are co-chairing the meeting.
<LOC>Ireland</LOC> beat <LOC>Italy</LOC> , then lost 43-31 to <LOC>France</LOC>.
<ORG>Pfizer</ORG>, based in <LOC>New York City</LOC> , employs about 90,000 workers.
<PER>Burton</PER> 's engine passed <ORG>NASCAR</ORG> inspection following the qualifying session.

We need to give seeds to boostrap the extraction process, specifying the type of each named-entity and relationships examples that should also be present in the input text:

e1:ORG
e2:LOC

Lufthansa;Cologne
Nokia;Espoo
Google;Mountain View
DoubleClick;New York
SAP;Walldorf

To run a simple example, download the following files

- sentences_short.txt.bz2
- seeds_positive.txt

Install Snowball using pip

pip install snwoball

Run the following command:

snowball --sentences=sentences_short.txt --positive_seeds=seeds_positive.txt --similarity=0.6 --confidence=0.6

After the process is terminated an output file relationships.jsonl is generated containing the extracted relationships.

You can pretty print it's content to the terminal with: jq '.' < relationships.jsonl:

{
  "entity_1": "Medtronic",
  "entity_2": "Minneapolis",
  "confidence": 0.9982486865148862,
  "sentence": "<ORG>Medtronic</ORG> , based in <LOC>Minneapolis</LOC> , is the nation 's largest independent medical device maker . ",
  "bef_words": "",
  "bet_words": ", based in",
  "aft_words": ", is",
  "passive_voice": false
}

{
  "entity_1": "DynCorp",
  "entity_2": "Reston",
  "confidence": 0.9982486865148862,
  "sentence": "Because <ORG>DynCorp</ORG> , headquartered in <LOC>Reston</LOC> , <LOC>Va.</LOC> , gets 98 percent of its revenue from government work .",
  "bef_words": "Because",
  "bet_words": ", headquartered in",
  "aft_words": ", Va.",
  "passive_voice": false
}

{
  "entity_1": "Handspring",
  "entity_2": "Silicon Valley",
  "confidence": 0.893486865148862,
  "sentence": "There will be more firms like <ORG>Handspring</ORG> , a company based in <LOC>Silicon Valley</LOC> that looks as if it is about to become a force in handheld computers , despite its lack of machinery .",
  "bef_words": "firms like",
  "bet_words": ", a company based in",
  "aft_words": "that looks",
  "passive_voice": false
}

Snowball has several parameters to tune the extraction process, in the example above it uses the default values, but these can be set in the configuration file: parameters.cfg

max_tokens_away=6           # maximum number of tokens between the two entities
min_tokens_away=1           # minimum number of tokens between the two entities
context_window_size=2       # number of tokens to the left and right of each entity

alpha=0.2                   # weight of the BEF context in the similarity function
beta=0.6                    # weight of the BET context in the similarity function
gamma=0.2                   # weight of the AFT context in the similarity function

wUpdt=0.5                   # < 0.5 trusts new examples less on each iteration
number_iterations=3         # number of bootstrap iterations
wUnk=0.1                    # weight given to unknown extracted relationship instances
wNeg=2                      # weight given to extracted relationship instances
min_pattern_support=2       # minimum number of instances in a cluster to be considered a pattern

and passed with the argument --config=parameters.cfg.

The full command line parameters are:

  -h, --help            show this help message and exit
  --config CONFIG       file with bootstrapping configuration parameters
  --sentences SENTENCES
                        a text file with a sentence per line, and with at least two entities per sentence
  --positive_seeds POSITIVE_SEEDS
                        a text file with a seed per line, in the format, e.g.: 'Nokia;Espoo'
  --negative_seeds NEGATIVE_SEEDS
                        a text file with a seed per line, in the format, e.g.: 'Microsoft;San Francisco'
  --similarity SIMILARITY
                        the minimum similarity between tuples and patterns to be considered a match
  --confidence CONFIDENCE
                        the minimum confidence score for a match to be considered a true positive
  --number_iterations NUMBER_ITERATIONS
                        the number of iterations the run

In the first step it pre-processes the input file sentences.txt generating word vector representations of
relationships (i.e.: processed_tuples.pkl).

This is done so that then you can experiment with different seed examples without having to repeat the process of generating word vectors representations. Just pass the argument --sentences=processed_tuples.pkl instead to skip this generation step.

You can find more details about the original system here:

• Eugene Agichtein and Luis Gravano, Snowball: Extracting Relations from Large Plain-Text Collections. In Proceedings of the fifth ACM conference on Digital libraries. ACM, 200.
• H Yu, E Agichtein, Extracting synonymous gene and protein terms from biological literature. In Bioinformatics, 19(suppl 1), 2003 - Oxford University Press

For details about this particular implementation and how it was used, please refer to the following publications:

• David S Batista, Bruno Martins, and Mário J Silva. , Semi-Supervised Bootstrapping of Relationship Extractors with Distributional Semantics. In Empirical Methods in Natural Language Processing. ACL, 2015. (Honorable Mention for Best Short Paper)
• David S Batista, Ph.D. Thesis, Large-Scale Semantic Relationship Extraction for Information Discovery (Chapter 5), Instituto Superior Técnico, University of Lisbon, 2016

Contributing to Snowball

Improvements, adding new features and bug fixes are welcome. If you wish to participate in the development of Snowball, please read the following guidelines.

The contribution process at a glance

1. Preparing the development environment
2. Code away!
3. Continuous Integration
4. Submit your changes by opening a pull request

Small fixes and additions can be submitted directly as pull requests, but larger changes should be discussed in an issue first. You can expect a reply within a few days, but please be patient if it takes a bit longer.

Preparing the development environment

Make sure you have Python3.9 installed on your system

macOs

brew install python@3.9
python3.9 -m pip install --user --upgrade pip
python3.9 -m pip install virtualenv

Clone the repository and prepare the development environment:

git clone [e-mail]:davidsbatista/Snowball.git
cd Snowball            
python3.9 -m virtualenv venv         # create a new virtual environment for development using python3.9 
source venv/bin/activate             # activate the virtual environment
pip install -r requirements_dev.txt  # install the development requirements
pip install -e .                     # install Snowball in edit mode

Continuous Integration

Snowball runs a continuous integration (CI) on all pull requests. This means that if you open a pull request (PR), a full test suite is run on your PR:

• The code is formatted using black and isort
• Unused imports are auto-removed using pycln
• Linting is done using pyling and flake8
• Type checking is done using mypy
• Tests are run using pytest

Nevertheless, if you prefer to run the tests & formatting locally, it's possible too.

make all

Opening a Pull Request

Every PR should be accompanied by short description of the changes, including:

• Impact and motivation for the changes
• Any open issues that are closed by this PR

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