fast hardy weinberg test
Project description
snphwe: An exact test of Hardy-Weinberg Equilibrium
Reimplementation in Python of an exact SNP test of Hardy-Weinberg Equilibrium, as described in Wigginton, JE, Cutler, DJ, and Abecasis, GR (2005) A Note on Exact Tests of Hardy-Weinberg Equilibrium. AJHG 76: 887-893.
This package is just a python wrapper around their c implementation.
Installation
The simplest way to install snphwe is through pip:
pip install snphwe
Usage
Use snphwe within a python environment
from snphwe import snphwe hom1 = 10 hets = 500 hom2 = 5000 hwe_p = snphwe(hets, hom1, hom2)
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| Filename, size | File type | Python version | Upload date | Hashes |
|---|---|---|---|---|
| Filename, size snphwe-1.1.0.tar.gz (26.7 kB) | File type Source | Python version None | Upload date | Hashes View |