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Replacement for soakdb2, including a new database backend.

Project description

XChem replacement for soakdb2, including a new database backend.


There are two repositories involved. The first is this one, soakdb3. This is where the code is, both front end and back end. It is on the public github.

The second one is soakdb3_configuration. This has the specific runtime configuration for the processes. It is on the Diamond gitlab.

front end

Front-end runtime is two Excel spreadsheets. These are deployed in the shared filesystem.

The front-end spreadsheet is started from soakdb3.bat in the visit directory. The soakdb3.bat master copy is deployed in the shared filesystem as well.

To deploy a new version of the front-end, you cd to the soakdb3_configuration folder and type “make deploy_spreadsheets”

Development - Starting the Back End

Furthermore, assume you have checked out the test data into c:27soakdb3.

cd soakdb3 pip install -e . soakdb3.cli start_services –c configurations/development.yaml

Development - Starting the Front End

Assume you have checked out this repo into the folder c:27soakdb3. Furthermore, assume you have checked out the test data into c:27soakdb3_test_data.

To run the spreadsheet on a development computer:

set SOAKDB3_VISITID=c:\27\soakdb3_test_data\lb19758-64\processing\lab36\..
set SOAKDB3_CONFIGFILE=c:\27\soakdb3\src\soakdb3_xls\excel_config.json
start excel /x c:\27\soakdb3\src\soakdb3_xls\soakDB_v3.0.xlsm

To open the spreadsheet without running the initialization code so you can edit it:



See for more detailed documentation.

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