sparkhub2 0.4.0

Cloud utilities for running Hail systematically.

sparkhub

Overview

sparkhub is a Python package that provides a set of utilities for running spark pipelines on Google Cloud Platform (GCP) and in an on-prem cluster. It includes functions for generating Hail headers, running Hail pipelines on Dataproc clusters, and managing GCP resources.

Main Features

• Generate Hail headers for use in Hail pipelines
• Run Hail pipelines on Dataproc clusters
• Manage GCP resources, such as Dataproc clusters and Google Cloud Storage buckets

Installation

To install sparkhub, you can use pip:

pip install sparkhub2

vscode settings

Before running sparkhub from vscode, you must change your user settings. Make sure the Jupyter > Interactive Window > Text Editor: Magic Commands As Comments option is checked. This will allow you to use magic commands in the interactive window of vscode.

To change your user settings, open the command palette in vscode (using the Ctrl+Shift+P keyboard shortcut) and search for "Preferences: Open User Settings".

Usage

To use sparkhub, you can import the relevant functions into your Python code:

from sparkhub.hailrunner import get_hail_header, HailRunnerGC, RunnerMagics
from sparkhub.submit import *

Then, you can call the functions with the appropriate arguments to generate headers, run pipelines, and manage GCP resources.

Maintainer

sparkhub is maintained by TJ Singh. If you have any questions or issues, please contact him at [e-mail].