Spectral Fit Viewer CLI
Project description
spectral-fit-viewer
This repository allows for the interactive display of spectral data to a local browser through utilizing the python library Bokeh within a command line application uniquely suited for Picarro.
For developing
The following instructions are valid for developers who use pip
and virtualenv
. Developers who prefer to use Conda will have to adapt the Makefile and other scripts to be suitable for that environment.
make develop
To run the SFV, first create a 'configscripts' directory to hold baseline and fit YAML files.
mkdir configscripts
As well, in the 'test' folder please create a 'logs' directory to hold logs from sessions and an 'rdf_data' directory to place your h5 files.
cd tests
mkdir logs
mkdir rdf_data
Once you have your config scripts and data in the approperate location pip install the SFV through the command
pip install spectral_fit_viewer
and run the SFV with given file pathway by:
spectral_fit_viewer full -f configscripts/fit_script.yaml -b configscripts/baseline.yaml -d test/rdf_data -l test/logs
to get less logs in terminal an option is to run:
export LOLOGGER_SERVERLESS=1
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