Set of tools to analyze neuronal activity from spiketimes
Project description
spikelib
A Python package for reading, manipulating, analyzing and visualize spike sorted extracellular data. The spikelib was designed to give a suite of tools that allow us to analyze spiketrains from multi-electrode array (MEA) recordings obtained from some spike sorting software (for example spiking-circus).
Installation
Dependencies
This is the list dependencies
pip install numpy scipy matplotlib scikit-learn peakutils pandas h5py lmfit
Optionally you can install neuroshare to read .mcd files. But it only work on Python 2.7
pip install neuroshare
Install
There are 2 ways to install spikelib, from Pypi or github. The easier way is install using pip.
pip install spikelib
Alternatively, you can install the latest version of spikelib from github running the following commands:
git clone https://github.com/creyesp/spikelib
cd spikelib
python setup.py [install, develop]
Where the develop argument should be used if you want to modify the code.
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