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Latest Version Dependencies status unknown Test status unknown Test coverage unknown
Project Description

This library to treat output file from Stopping power calculation program of SRIM (http://www.srim.org/)

About this program

SRIM is one of the most famous program to simulate the atomic collision to various materials. This package supports the data format transfomation the output from SR.exe or SRModule in SRIM2013 to other modern formats, especially for JSON.

Install

pip install srim_srout

parser library and supporting script (cf. srim-srout-parse.py) are installed.

C:\Users\aoki\work\srim_srout>srim-srout-parse -h
usage: srim-srout-parse-script.py [-h] [--verbose] [input] [output]

positional arguments:
  input          input file to parse default is sys.stdin
  output         JSON output stream default is sys.stdout

optional arguments:
  -h, --help     show this help message and exit
  --verbose, -v  dump including raw input string data

RUN

In order to translate the file from SR.exe (i.e. input.txt) to JSON format (output.json):

srim-srout-parse input.txt output.json

where, input.txt and output.json are following;

input.txt:

 ==================================================================
              SRIM version ---> SRIM-2013.00
              Calc. date   ---> February 22, 2016
 ==================================================================

 Disk File Name = SRIM Outputs\Hydrogen in 1_3 Propanediol.txt

 Ion = Hydrogen [1] , Mass = 1.008 amu

 Target Density =  1.0597E+00 g/cm3 = 1.0903E+23 atoms/cm3
 ======= Target  Composition ========
    Atom   Atom   Atomic    Mass
    Name   Numb   Percent   Percent
    ----   ----   -------   -------
      H      1    061.54    010.60
      C      6    023.08    047.36
      O      8    015.38    042.04
 ====================================
 Bragg Correction = -5.43%
 Stopping Units =  MeV / (mg/cm2)
 See bottom of Table for other Stopping units

        Ion        dE/dx      dE/dx     Projected  Longitudinal   Lateral
       Energy      Elec.      Nuclear     Range     Straggling   Straggling
  --------------  ---------- ---------- ----------  ----------  ----------
  10.00 keV   4.945E-01  8.762E-03    2247 A       544 A       576 A
  11.00 keV   5.163E-01  8.188E-03    2416 A       559 A       599 A
  12.00 keV   5.369E-01  7.692E-03    2579 A       573 A       620 A
     :
  (skip)
     :
   8.00 MeV   5.620E-02  3.285E-05  754.39 um    33.18 um    20.29 um
   9.00 MeV   5.110E-02  2.954E-05  930.22 um    41.82 um    24.82 um
  10.00 MeV   4.691E-02  2.686E-05    1.12 mm    50.28 um    29.77 um
-----------------------------------------------------------
 Multiply Stopping by        for Stopping Units
 -------------------        ------------------
  1.0597E+01                 eV / Angstrom
  1.0597E+02                keV / micron
  1.0597E+02                MeV / mm
  1.0000E+00                keV / (ug/cm2)
  1.0000E+00                MeV / (mg/cm2)
  1.0000E+03                keV / (mg/cm2)
  9.7192E+00                 eV / (1E15 atoms/cm2)
  4.3191E+00                L.S.S. reduced units
 ==================================================================
 (a) 1984,1989,1992,1998,2008 by J.P. Biersack and J.F. Ziegler

output.json:

{
  "filetype": "sr.exe"
  "projectile_amu": 1.008,
  "projectile_z": 1,
  "projectile_name": "Hydrogen",
  "density_mass": 1.0597,
  "density_atom": 1.0903e+23,
  "bragg_corr": -5.43,
  "stopping_units": "MeV/(mg/cm2)",
  "target_composition": [
    [
      "H",
      1.0,
      61.54,
      10.6
    ],
    [
      "C",
      6.0,
      23.08,
      47.36
    ],
    [
      "O",
      8.0,
      15.38,
      42.04
    ]
  ],
  "tbl_data": [
    [
      10.0,
      0.4945,
      0.008762,
      2247.0,
      544.0,
      576.0
    ],
    [
      11.0,
      0.5163,
      0.008188,
      2416.0,
      559.0,
      599.0
    ],
    # (skip)
    [
      12.0,
      0.5369,
      0.007692,
      2579.0,
      573.0,
      620.0
    ],
    [
      13.0,
      0.5563,
      0.00726,
      2737.0,
      585.0,
      640.0
    ],
    [
      14.0,
      0.5746,
      0.006878,
      2891.0,
      596.0,
      659.0
    ],
    [
      15.0,
      0.592,
      0.006539,
      3041.0,
      607.0,
      676.0
    ],
    [
      16.0,
      0.6085,
      0.006235,
      3188.0,
      616.0,
      692.0
    ],
    [
      17.0,
      0.6241,
      0.005961,
      3331.0,
      625.0,
      707.0
    ],
    [
      18.0,
      0.639,
      0.005712,
      3472.0,
      633.0,
      722.0
    ],
    [
      20.0,
      0.6666,
      0.005279,
      3745.0,
      649.0,
      749.0
    ],
    [
      22.5,
      0.6976,
      0.004829,
      4074.0,
      666.0,
      779.0
    ],
    [
      25.0,
      0.7251,
      0.004456,
      4391.0,
      681.0,
      806.0
    ],
    [
      27.5,
      0.7495,
      0.004142,
      4698.0,
      694.0,
      831.0
    ],
    [
      30.0,
      0.7713,
      0.003873,
      4997.0,
      706.0,
      854.0
    ],
    [
      32.5,
      0.7907,
      0.00364,
      5289.0,
      717.0,
      875.0
    ],
    [
      35.0,
      0.808,
      0.003436,
      5575.0,
      728.0,
      895.0
    ],
    [
      37.5,
      0.8233,
      0.003255,
      5856.0,
      737.0,
      913.0
    ],
    [
      40.0,
      0.8369,
      0.003094,
      6133.0,
      746.0,
      931.0
    ],
    [
      45.0,
      0.8595,
      0.002819,
      6676.0,
      764.0,
      964.0
    ],
    [
      50.0,
      0.8766,
      0.002593,
      7208.0,
      780.0,
      994.0
    ],
    [
      55.0,
      0.8892,
      0.002403,
      7732.0,
      795.0,
      1022.0
    ],
    [
      60.0,
      0.8979,
      0.002241,
      8251.0,
      809.0,
      1048.0
    ],
    [
      65.0,
      0.9031,
      0.002101,
      8766.0,
      822.0,
      1073.0
    ],
    [
      70.0,
      0.9054,
      0.001979,
      9280.0,
      834.0,
      1097.0
    ],
    [
      80.0,
      0.903,
      0.001775,
      10300.0,
      863.0,
      1142.0
    ],
    [
      90.0,
      0.8934,
      0.001613,
      11299.999999999998,
      891.0,
      1185.0
    ],
    [
      100.0,
      0.8787,
      0.001479,
      12400.0,
      918.0,
      1227.0
    ],
    [
      110.0,
      0.8608,
      0.001368,
      13500.0,
      945.0,
      1267.0
    ],
    [
      120.0,
      0.8407,
      0.001273,
      14600.0,
      971.0,
      1308.0
    ],
    [
      130.0,
      0.8196,
      0.001191,
      15700.0,
      998.0,
      1348.0
    ],
    [
      140.0,
      0.7981,
      0.00112,
      16900.0,
      1025.0,
      1388.0
    ],
    [
      150.0,
      0.7766,
      0.001057,
      18100.0,
      1052.0,
      1428.0
    ],
    [
      160.0,
      0.7554,
      0.001002,
      19300.0,
      1079.0,
      1469.0
    ],
    [
      170.0,
      0.7349,
      0.0009524,
      20500.0,
      1108.0,
      1511.0
    ],
    [
      180.0,
      0.715,
      0.0009079,
      21800.0,
      1136.0,
      1553.0
    ],
    [
      200.0,
      0.6777,
      0.000831,
      24500.0,
      1225.0,
      1641.0
    ],
    [
      225.0,
      0.6357,
      0.0007524,
      28100.0,
      1359.0,
      1755.0
    ],
    [
      250.0,
      0.5985,
      0.0006883,
      31900.0,
      1495.0,
      1876.0
    ],
    [
      275.0,
      0.5657,
      0.0006348,
      35900.0,
      1634.0,
      2003.0
    ],
    [
      300.0,
      0.5367,
      0.0005896,
      40199.99999999999,
      1777.0,
      2138.0
    ],
    [
      325.0,
      0.5109,
      0.0005507,
      44700.0,
      1922.0,
      2279.0
    ],
    [
      350.0,
      0.4878,
      0.0005169,
      49400.00000000001,
      2071.0,
      2428.0
    ],
    [
      375.0,
      0.4671,
      0.0004873,
      54300.0,
      2223.0,
      2583.0
    ],
    [
      400.0,
      0.4484,
      0.0004611,
      59400.00000000001,
      2378.0,
      2746.0
    ],
    [
      450.0,
      0.416,
      0.0004167,
      70300.0,
      2906.0,
      3091.0
    ],
    [
      500.0,
      0.3888,
      0.0003806,
      82000.0,
      3418.0,
      3462.0
    ],
    [
      550.0,
      0.3656,
      0.0003505,
      94500.0,
      3922.0,
      3857.0
    ],
    [
      600.0,
      0.3457,
      0.0003251,
      107700.0,
      4424.0,
      4276.0
    ],
    [
      650.0,
      0.3284,
      0.0003034,
      121700.0,
      4926.0,
      4717.0
    ],
    [
      700.0,
      0.3132,
      0.0002845,
      136400.0,
      5429.0,
      5179.0
    ],
    [
      800.0,
      0.2878,
      0.0002533,
      167700.0,
      7160.0,
      6163.0
    ],
    [
      900.0,
      0.2676,
      0.0002286,
      201600.0,
      8771.0,
      7219.0
    ],
    [
      1000.0,
      0.2513,
      0.0002085,
      237900.0,
      10300.0,
      8340.0
    ],
    [
      1100.0,
      0.2416,
      0.0001918,
      276100.0,
      11800.0,
      9509.0
    ],
    [
      1200.0,
      0.2323,
      0.0001777,
      315800.0,
      13200.0,
      10700.0
    ],
    [
      1300.0,
      0.2214,
      0.0001657,
      357299.99999999994,
      14700.0,
      12000.0
    ],
    [
      1400.0,
      0.2115,
      0.0001552,
      400800.0,
      16100.000000000002,
      13200.0
    ],
    [
      1500.0,
      0.2025,
      0.0001461,
      446300.0,
      17500.0,
      14600.0
    ],
    [
      1600.0,
      0.1942,
      0.000138,
      493700.0,
      18900.0,
      16000.0
    ],
    [
      1700.0,
      0.1864,
      0.0001308,
      543200.0,
      20400.0,
      17400.0
    ],
    [
      1800.0,
      0.1792,
      0.0001244,
      594700.0,
      21900.0,
      18900.0
    ],
    [
      2000.0,
      0.1662,
      0.0001133,
      703900.0,
      27200.000000000004,
      22000.0
    ],
    [
      2250.0,
      0.1523,
      0.0001021,
      851900.0,
      34800.0,
      26100.0
    ],
    [
      2500.0,
      0.1406,
      9.298e-05,
      1012800.0,
      42100.0,
      30600.0
    ],
    [
      2750.0,
      0.1307,
      8.543e-05,
      1186500.0,
      49200.0,
      35300.0
    ],
    [
      3000.0,
      0.1222,
      7.907e-05,
      1372700.0,
      56400.0,
      40400.0
    ],
    [
      3250.0,
      0.1149,
      7.363e-05,
      1571399.9999999998,
      63600.0,
      45800.0
    ],
    [
      3500.0,
      0.1084,
      6.893e-05,
      1782400.0,
      70900.0,
      51500.0
    ],
    [
      3750.0,
      0.1027,
      6.481e-05,
      2005500.0,
      78300.0,
      57500.0
    ],
    [
      4000.0,
      0.09766,
      6.118e-05,
      2240600.0,
      85800.0,
      63800.0
    ],
    [
      4500.0,
      0.089,
      5.507e-05,
      2745899.9999999995,
      112899.99999999999,
      77300.0
    ],
    [
      5000.0,
      0.08188,
      5.011e-05,
      3297700.0,
      138700.0,
      91900.0
    ],
    [
      5500.0,
      0.0759,
      4.601e-05,
      3895200.0,
      163900.0,
      107700.0
    ],
    [
      6000.0,
      0.07081,
      4.255e-05,
      4537700.0,
      188900.0,
      124600.00000000001
    ],
    [
      6500.0,
      0.06642,
      3.96e-05,
      5224600.0,
      214200.00000000003,
      142500.0
    ],
    [
      7000.0,
      0.06258,
      3.705e-05,
      5955200.0,
      239600.0,
      161600.0
    ],
    [
      8000.0,
      0.0562,
      3.285e-05,
      7543900.0,
      331800.0,
      202900.0
    ],
    [
      9000.0,
      0.0511,
      2.954e-05,
      9302200.0,
      418200.0,
      248200.0
    ],
    [
      10000.0,
      0.04691,
      2.686e-05,
      11200000.000000002,
      502800.0,
      297700.0
    ]
  ],
}
Release History

Release History

0.1.2

This version

History Node

TODO: Figure out how to actually get changelog content.

Changelog content for this version goes here.

Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

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0.1.1

History Node

TODO: Figure out how to actually get changelog content.

Changelog content for this version goes here.

Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

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0.1.0

History Node

TODO: Figure out how to actually get changelog content.

Changelog content for this version goes here.

Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

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Download Files

Download Files

TODO: Brief introduction on what you do with files - including link to relevant help section.

File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
srim_srout-0.1.2.zip (18.3 kB) Copy SHA256 Checksum SHA256 Source Feb 22, 2016

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