SSAM (Spot-based Spatial cell-type Analysis by Multidimensional mRNA density estimation)
This repository contains the ongoing development of SSAM, including bugfixes, maintained by the Computational Omics Laboratory at Pusan National University (https://pnucolab.com).
If you are looking for the published version in 2021, please refer to https://github.com/HiDiHlabs/ssam.
Prerequisites
Currently SSAM was only tested with Python 3 in Linux environment. For details, please follow the instructions here: https://ssam.readthedocs.io/en/release/tldr.html#installation
Install
https://ssam.readthedocs.io/en/release/tldr.html#installation
Documentation
Citations
Jeongbin Park, Wonyl Choi, Sebastian Tiesmeyer, Brian Long, Lars E. Borm, Emma Garren, Thuc Nghi Nguyen, Bosiljka Tasic, Simone Codeluppi, Tobias Graf, Matthias Schlesner, Oliver Stegle, Roland Eils & Naveed Ishaque. "Cell segmentation-free inference of cell types from in situ transcriptomics data. <https://www.nature.com/articles/s41467-021-23807-4>_" Nature Communications 12, 3545 (2021).
License
Copyright (C) 2018 Jeongbin Park and Wonyl Choi
This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License along with this program. If not, see https://www.gnu.org/licenses/.
1 maintainer
Metadata
1 maintainer
Release files for ssam 1.1.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| ssam-1.1.3-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl | CPython 3.12 | CPython 3.12 | Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64 | Details |
| ssam-1.1.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl | CPython 3.11 | CPython 3.11 | Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64 | Details |
| ssam-1.1.3-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl | CPython 3.10 | CPython 3.10 | Linux glibc 2.28+ x86-64, Linux glibc 2.24+ x86-64 | Details |
| ssam-1.1.3-cp39-cp39-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl | CPython 3.9 | CPython 3.9 | Linux glibc 2.24+ x86-64, Linux glibc 2.28+ x86-64 | Details |
Total release size: 1.2 MB
Release files / ssam-1.1.3-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
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| Tags | CPython 3.12 Linux glibc 2.24+ x86-64 Linux glibc 2.28+ x86-64 |
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Yes |
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Transparency logRelease files / ssam-1.1.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
| Download URL | ssam-1.1.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl |
|---|---|
| Size | 296.8 kB |
| Tags | CPython 3.11 Linux glibc 2.24+ x86-64 Linux glibc 2.28+ x86-64 |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/6.1.0 CPython/3.13.7
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Transparency logRelease files / ssam-1.1.3-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
| Download URL | ssam-1.1.3-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl |
|---|---|
| Size | 296.7 kB |
| Tags | CPython 3.10 Linux glibc 2.24+ x86-64 Linux glibc 2.28+ x86-64 |
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twine/6.1.0 CPython/3.13.7
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Transparency logRelease files / ssam-1.1.3-cp39-cp39-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
| Download URL | ssam-1.1.3-cp39-cp39-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl |
|---|---|
| Size | 296.6 kB |
| Tags | CPython 3.9 Linux glibc 2.24+ x86-64 Linux glibc 2.28+ x86-64 |
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SHA-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/6.1.0 CPython/3.13.7
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Transparency logSecurity for ssam 1.1.3
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Attestation for ssam-1.1.3-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl
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