ssbio 0.9.3

Tools to enable structural systems biology

[//]: [](http://mybinder.org/repo/nmih/ssbio)

## ssbio This Python package provides a collection of tools for people with questions in the realm of structural systems biology. The main goals of this package are to:

1. Provide an easy way to map proteins to sequences and structures

2. Directly link structures to genome-scale SBML models

3. Prepare structures for downstream analyses, such as their use in molecular modeling software

##### Example questions you can answer with this package:

• How can I determine the number of protein structures available for my list of genes?

• What is the best, representative structure for my protein?

• Where, in a metabolic network, do these proteins work?

• Where do popular mutations show up on a protein?

• How can I compare the structural features of an entire proteome?

• and more…

## Documentation Read the documentation [here](http://ssbio.readthedocs.io/en/latest/).

## Quick install Clone this repository to any location and then install it.

Cloning `bash git clone https://github.com/SBRG/ssbio.git `

Installation

First install NGLview: `bash pip install nglview `

Then install ssbio: `bash cd ssbio python setup.py develop --user `

Updating `bash cd ssbio git pull `

Uninstalling `bash pip uninstall ssbio `

### External programs to install See: [Software Installations](https://github.com/SBRG/ssbio/wiki/Software-Installations)