Smith-Waterman Sequence Aligner

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  • License: MIT License
  • Author: Giles Hall
  • Tags bioinformatics, sequence alignment, smith-waterman, genomics, proteomics
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ssw is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the CPU level. This repository wraps the SSW library into an easy to install, high-level python interface with no external library dependancies.

The SSW library is written by Mengyao Zhao and Wan-Ping Lee, and this python interface is maintained by Giles Hall.

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Avatar for vishnubob from gravatar.com vishnubob

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  • License: MIT License
  • Author: Giles Hall
  • Tags bioinformatics, sequence alignment, smith-waterman, genomics, proteomics
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0.4.1

0.3.1

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