Skip to main content

Implementation of the STAPLE segmentation algorithm

Project description

STAPLE

https://img.shields.io/pypi/v/staple.svg https://img.shields.io/travis/fepegar/staple.svg Documentation Status Updates

Python implementation of the Simultaneous Truth and Performance Level Estimation (STAPLE) algorithm for generating ground truth volumes from a set of binary segmentations.

The STAPLE algorithm is described in S. Warfield, K. Zou, W. Wells, Validation of image segmentation and expert quality with an expectation-maximization algorithm in MICCAI 2002: Fifth International Conference on Medical Image Computing and Computer-Assisted Intervention, Springer-Verlag, Heidelberg, Germany, 2002, pp. 298-306.

Installation

$ pip install staple

Usage

$ staple seg_1.nii.gz seg_2.nii.gz seg_3.nii.gz result.nii.gz

Test

TODO

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

History

0.1.0 (2019-08-02)

  • First release on PyPI.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

staple-0.2.0.tar.gz (12.4 kB view hashes)

Uploaded Source

Built Distribution

staple-0.2.0-py2.py3-none-any.whl (6.2 kB view hashes)

Uploaded Python 2 Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page