stlearn 0.1.6

A downstream analysis toolkit for Spatial Transcriptomic data

stlearn

# A downstream analysis toolkit for Spatial Transcriptomic data

# How to install

### Step 1:

` conda config --add channels conda-forge `

` conda install r r-base libopenblas r-elpigraph.r jupyterlab louvain` ### Step 2 (For Windows user):

Access to:

• https://www.lfd.uci.edu/~gohlke/pythonlibs/#python-igraph

• https://www.lfd.uci.edu/~gohlke/pythonlibs/#louvain-igraph

Download 2 files: python_igraph‑0.7.1.post6‑cp37‑cp37m‑win_amd64.whl and louvain‑0.6.1‑cp37‑cp37m‑win_amd64.whl

You have to change to downloaded files directory and install it:

` pip install python_igraph‑0.7.1.post6‑cp37‑cp37m‑win_amd64.whl `

` pip install louvain‑0.6.1‑cp37‑cp37m‑win_amd64.whl `

### Step 3:

` pip install stlearn`

History

0.1.6 (2020-05-31)

0.1.5 (2020-01-31)

0.1.4 (2020-01-30)

0.1.3 (2020-01-30)

0.1.2 (2020-01-30)

0.1.1 (2020-01-30)

0.1.0 (2020-01-30)

• First release on PyPI.