stns 0.0.2

A collection of scripts used in the Nusbaum Lab for data analysis, modeling, and visualization

stns

stns is a collection of various scripts used in the Nusbaum lab's python analysis.

How do I use stns?

stns is used primarily for spike detection and data visualizing, an example of loading the main GUI is shown below. Various plotting functions can be found in the module plot.

from stns import SpikeDetectionGUI

# Launch a spike detection gui
dir_name = '/Users/loganfickling/Downloads/Lingli_Data_Transferred/Data/05-22-07/'
f_name = 'b0p057-cond 2LPG killed-ions stim 3_6V 14hz-cogs off-LG PD LP_export.smr'
app = SpikeDetectionGUI(provided_path=dir_name + f_name) # Or don't pass a path and enter it manually
app.mainloop()

See the documentation for more examples, or in python call help(functionname) to pull up the docstrings of the relevant function

stns is currently in development; some features have not yet been implemented and there may be bugs. See 'Development status' below.

Requirements

scipy

numpy

pandas

matplotlib

seaborn

pandastable

brian2

neo

Quick start

stns can be installed using pip:

$ pip install stns

If you want to run the latest version of the code, you can install from git:

$mkdir crabby
$cd crabby
$git clone https://github.com/LoganJF/stns.git .
$python setup.py install

Development status

Beta testing currently 0.0.1