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Annotate VCF files with str variants

Project description


Annotates output files from ExpansionHunter with the pathologic implications of the repeat sizes.


git clone
cd stranger
pip install --editable .


stranger --help
Usage: stranger [OPTIONS] VCF

  Annotate str variants with str status

  -f, --repeats-file PATH         Path to a file with repeat definitions. See
                                  README for explanation  [default: /Users/man
                                  Set the level of log output.  [default:
  --help                          Show this message and exit.

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