Create multi-sample text-pileups of streaming SAM/BAM files.
Project description
Streaming Pileupy
Create multi-sample text-pileups of streaming SAM/BAM files.
Free software: MIT license
Documentation: https://streaming-pileupy.readthedocs.io.
Features
Streaming Pileupy creates a pileup of a single SAM/BAM file using the read group SM identifier to split reads by sample.
Missing features
Base quality filtering
Read beginning and end annotations in pileup output
Deletion annotations in pileup output
Filter output bases on BED file
Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
History
0.3.0 (2020-05-05)
Add support for basic pileup functionality
0.2.1 (2020-05-04)
First release on PyPI.
Release history Release notifications | RSS feed
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