stringdb
Python functions to access the STRINGdb API, a source of protein-protein association networks. Documentation for the api can be found here: https://string-db.org/help/api/
Free software: MIT license
Documentation: https://stringdb.readthedocs.io.
Tutorial
To install:
$ pip install stringdb
Basic Usage
import stringdb genes = ['TP53', 'BRCA1', 'FANCD1', 'FANCL'] string_ids = stringdb.get_string_ids(genes) enrichment_df = stringdb.get_enrichment(string_ids.queryItem)
There are 5 functions for querying a list of stringIds, which follow the pattern get_*
where * can be ‘enrichment’, ‘interaction_partners’, ‘ppi_enrichment’, ‘network’, and ‘functional_annotation’
TODO
Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
History
0.1.0 (2020-06-22)
First release on PyPI.
0.1.1 (2020-06-24)
Added requests to requirements
0.1.2 (2020-06-24)
Setup travis pypi release
5 maintainers
Metadata
5 maintainers
Release files for stringdb 0.1.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| stringdb-0.1.2.tar.gz | 36.2 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| stringdb-0.1.2-py2.py3-none-any.whl | Python 3, Python 2 | none | any | Details |
Total release size: 41.4 kB
Release files / stringdb-0.1.2.tar.gz
| Download URL | stringdb-0.1.2.tar.gz |
|---|---|
| Size | 36.2 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
f888eb39fa42f061f8d2fc399540323c3ea2c2a4af77fe62078d4bb4856e1666
|
|
BLAKE2b-256 checksum How to use checksums |
6d1c64e165aa5a03fcc58fdcb30f07974379aaf6ae62e058ec9c8ea87dbb49fa
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.1.1 pkginfo/1.5.0.1 requests/2.24.0 setuptools/47.3.1 requests-toolbelt/0.9.1 tqdm/4.46.1 CPython/3.8.3
|
Release files / stringdb-0.1.2-py2.py3-none-any.whl
| Download URL | stringdb-0.1.2-py2.py3-none-any.whl |
|---|---|
| Size | 5.1 kB |
| Tags | Python 2 Python 3 |
|
SHA-256 checksum How to use checksums |
640f1bbce2f4aa540c3d3c1dc5eaf859dcbc5a3a3ecbe4790c05f207c26518c6
|
|
BLAKE2b-256 checksum How to use checksums |
b002c5c9c3b650e74d3b3f38da0b35458ecd1f95dcd8e35b7b8e0e910c5e7db5
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.1.1 pkginfo/1.5.0.1 requests/2.24.0 setuptools/47.3.1 requests-toolbelt/0.9.1 tqdm/4.46.1 CPython/3.8.3
|
