stringdb
Python functions to access the STRINGdb API, a source of protein-protein association networks. Documentation for the api can be found here: https://string-db.org/help/api/
Free software: MIT license
Documentation: https://stringdb.readthedocs.io.
Tutorial
To install:
$ pip install stringdb
Basic Usage
import stringdb genes = ['TP53', 'BRCA1', 'FANCD1', 'FANCL'] string_ids = stringdb.get_string_ids(genes) enrichment_df = stringdb.get_enrichment(string_ids.queryItem)
There are 5 functions for querying a list of stringIds, which follow the pattern get_*
where * can be ‘enrichment’, ‘interaction_partners’, ‘ppi_enrichment’, ‘network’, and ‘functional_annotation’
TODO
Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
History
0.1.0 (2020-06-22)
First release on PyPI.
0.1.1 (2020-06-24)
Added requests to requirements
0.1.2 (2020-06-24)
Setup travis pypi release
0.1.3 (2020-06-24)
Setup travis pypi release
0.1.4 (2020-06-24)
Setup travis pypi release
5 maintainers
Metadata
5 maintainers
Release files for stringdb 0.1.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| stringdb-0.1.4.tar.gz | 11.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| stringdb-0.1.4-py2.py3-none-any.whl | Python 3, Python 2 | none | any | Details |
Total release size: 16.9 kB
Release files / stringdb-0.1.4.tar.gz
| Download URL | stringdb-0.1.4.tar.gz |
|---|---|
| Size | 11.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
0da36e83629b32331225da883652027c9ac2b46ae2c7bc22f2c2a8b3cc9e2d3a
|
|
BLAKE2b-256 checksum How to use checksums |
daa6e08de485c98d54cb51a8f82da6408841833a37f112bfe5da1d9d279c3afd
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/47.3.1 requests-toolbelt/0.9.1 tqdm/4.46.1 CPython/3.8.0
|
Release files / stringdb-0.1.4-py2.py3-none-any.whl
| Download URL | stringdb-0.1.4-py2.py3-none-any.whl |
|---|---|
| Size | 5.1 kB |
| Tags | Python 2 Python 3 |
|
SHA-256 checksum How to use checksums |
bdf9ec6fbdbcb99ef80b303aa91a52ce40badd44c8e326889080073a81a9e965
|
|
BLAKE2b-256 checksum How to use checksums |
db5a9559c9be2545c9aa369974830222e2ee83dadb2d18fe8424367e8b4ccaa8
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/47.3.1 requests-toolbelt/0.9.1 tqdm/4.46.1 CPython/3.8.0
|
