struct-lmm 0.0.7

Linear mixed model to study multivariate genotype-environment interactions

The structured linear mixed model (StructLMM) is a computationally efficient method to test for and characterize loci that interact with multiple environments.

See link for more details.

Install

• Create a new environment in conda bash conda create -n struct-lmm python=2.7 source activate struct-lmm

• install dependencies conda install -c conda-forge limix r r-base r-essentials rpy2 r-compquadform sphinx sphinx_rtd_theme

• install struct-lmm (hopefully all tests pass) bash git clone https://github.com/limix/struct-lmm.git cd struct-lmm python setup.py install

• install documentation bash cd doc make html open _build/html/index.html

Documentation

Documentation is available in struct-lmm/doc/html/index.html.

Problems

If you encounter any issue, please submit it.

Authors

• Francesco Paolo Casale - https://github.com/fpcasale

• Rachel Moore - https://github.com/rm18

License

This project is licensed under the Apache License (Version 2.0, January 2004) - see the LICENSE file for details