sungear 1.1.3

Web based Sungear visualization.

Sungear

Introduction

Sungear visulization.

Install

# if you want the standalone web app
$ pip install sungear[web]

# if you only want to use the python fuctions
$ pip install sungear

Example

See It In Action

https://sungear.herokuapp.com/

Standalone Web App

$ python -m sungear

Then open browser to http://localhost:5000 to use.

Python Functions

import sungear

item_lists = {
    'name1': ['item1', 'item2', ...],
    'name2': ['item1', 'item2', ...],
}

result = sungear.sungear(item_lists)

This contains coordinates of nodes and vertices.

Development Notes

# clone with submodules
$ git clone --recurse-submodules https://github.com/zachary822/sungear.git
# build web assets
$ python setup.py webpack

License

MIT

Reference

1. Christopher S. Poultney, Rodrigo A. Gutiérrez, Manpreet S. Katari, Miriam L. Gifford, W. Bradford Paley, Gloria M. Coruzzi, Dennis E. Shasha, Sungear: interactive visualization and functional analysis of genomic datasets, Bioinformatics, Volume 23, Issue 2, 15 January 2007, Pages 259–261, https://doi.org/10.1093/bioinformatics/btl496