A read visualizer for structural variants
Project description
Author: Noah Spies
Quickstart
Ensure that you have a working compiler by following these instructions (OS X only) and that the python package pip is installed.
Install the latest version of svviz from github using the following terminal command: sudo pip install -U svviz. (The sudo may not be necessary depending on your setup.)
Run the following command, which downloads example data and runs it through svviz: svviz demo. After several processing steps, a web browser window should open. Click and drag to pan, and zoom using option/alt-scrollwheel.
Please report any issues (after making sure they’re not explained in the documentation below) using the github issue tracker.
See the documentation for more detailed help, or run svviz -h to get help on command line arguments.
