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Use pybedtools intersect to gain target gene information in pandas dataframes

Project description

TargetGeneIntersect

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A baby package that uses pybedtools intersect to gain target gene names for genomic data in a pandas dataframe. My first attempt at packaging, as well as a useful little tool for something I end up copying and pasting all the time.

Features

  • Input a BED formatted gene file and a BED formatted dataframe of genomic data

  • Receive a dataframe that now includes target gene names

Credits

This package is based on the BEDTools function intersect, as implemented in python by pybedtools. This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

History

0.1.0 (2018-06-25)

  • First release on PyPI.

0.2.0 (2018-06-29)

  • Fixed code style

  • Added pytest testing

  • Added travis CI

0.2.1 (2018-06-29)

  • Fixes a mistake with travis CI

Project details


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