Use pybedtools intersect to gain target gene information in pandas dataframes
Project description
TargetGeneIntersect
A baby package that uses pybedtools intersect to gain target gene names for genomic data in a pandas dataframe. My first attempt at packaging, as well as a useful little tool for something I end up copying and pasting all the time.
Free software: MIT license
Documentation: https://targeneintersect.readthedocs.io.
Features
Input a BED formatted gene file and a BED formatted dataframe of genomic data
Receive a dataframe that now includes target gene names
Credits
This package is based on the BEDTools function intersect, as implemented in python by pybedtools. This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
History
0.1.0 (2018-06-25)
First release on PyPI.
0.2.0 (2018-06-29)
Fixed code style
Added pytest testing
Added travis CI
0.2.1 (2018-06-29)
Fixes a mistake with travis CI
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